From One Electron to One Atom
A one-page reminder of Lectures 15–16. Today we ask why the atomic scattering factor depends on \(\theta\) and \(\lambda\) only through \(\sin\theta/\lambda\), then stack atoms into planes.
One electron, driven by \(\mathbf E\), re-radiates at the same \(\lambda\). \(K = 7.94\times10^{-30}\) m².
Unpolarised beam: the \(z\)-component of \(\mathbf E\) cannot radiate along its own direction.
Only elastic (Thomson) scattering keeps a fixed phase and gives peaks; Compton only adds background.
The atomic scattering factor \(f\) falls with \(\sin\theta/\lambda\) because electrons in the cloud scatter with path differences.
Where Does \(\sin\theta/\lambda\) Come From?
Two electrons in one atom see the same incident wave. Their scattered waves differ in phase by an amount that depends only on the change of wave vector, \(\Delta\mathbf k = \mathbf k' - \mathbf k\), whose length is \(2\sin\theta/\lambda\).
Two Electrons, One Triangle
- 1Path difference: \(\delta = \mathbf r\cdot\mathbf s - \mathbf r\cdot\mathbf s_0 = \mathbf r\cdot(\mathbf s-\mathbf s_0)\), with \(\mathbf s_0, \mathbf s\) unit vectors along the incident and scattered beams.
- 2Phase: \(2\pi\delta/\lambda = 2\pi\,\mathbf r\cdot\Delta\mathbf k\), with \(\Delta\mathbf k = (\mathbf s-\mathbf s_0)/\lambda = \mathbf k'-\mathbf k\).
- 3\(|\mathbf k| = |\mathbf k'| = 1/\lambda\) with \(2\theta\) between them: an isosceles triangle, so \(|\Delta\mathbf k| = 2\sin\theta/\lambda\).
- 4Summing over the cloud, \(f = \int\rho(\mathbf r)\,e^{2\pi i\,\Delta\mathbf k\cdot\mathbf r}\,dV\) depends on \(\theta\) and \(\lambda\) only through \(\sin\theta/\lambda\). At \(\theta=0\), \(\Delta\mathbf k = 0\) and \(f = Z\).
- 5With Bragg’s law \(\lambda = 2d\sin\theta\): \(\sin\theta/\lambda = 1/(2d)\). For a given \((hkl)\), \(f\) is the same whatever the radiation.
Computing \(f\) for Tungsten (W)
One W atom, Cu Kα radiation, \((222)\) planes of bcc W with \(a = 3.1653\) Å.
\(a_1 = 5.709,\ b_1 = 28.782\)
\(a_2 = 4.677,\ b_2 = 5.084\)
\(a_3 = 2.019,\ b_3 = 0.572\)
\(f_W\) for Any Reflection of bcc W
| Quantity | Value |
|---|
Bragg’s Law
What happens when several parallel planes are involved? Each plane reflects a little of the beam. The reflections add up only if they arrive in step: the path difference between them must be a whole number of wavelengths, or equivalently, the phase difference must be a multiple of \(2\pi\).
The Bragg Laboratory
Ray 1 reflects from atom A on the top plane; ray 2 from atom O one plane deeper. Ray 2 travels the extra distance PO + OQ. Change the angle and watch the waves leaving on the right slide in and out of step.
Deriving Bragg’s Law
Orders ↔ Planes
A simple cubic crystal (\(a = 0.40\) nm) and Cu Kα X-rays. Choose \((hkl)\) and see every order \(n\) that fits under \(\sin\theta \le 1\), with its equivalent first-order plane.
Systematic Absences
Crystal symmetries with centring translations, or with symmetry operations that carry a translation part (screw rotations and glides), make certain reflections vanish, even though Bragg’s law is satisfied.
Primitive vs Centred Rectangular Lattice
Solid lines are the \((hk)\) planes through the corner points. Add a point at the centre of every cell and see where the new points fall. Try the \((21)\) planes first.
Conditions for Systematic Absences
Adapted from F. A. Cotton, Chemical Applications of Group Theory. A reflection listed here is absent (\(n\) is any integer).
| Condition | Reflections | Absent when |
|---|
Lattice-Centring Checker
Bragg’s Law in Reciprocal Space: the Ewald Sphere
Bragg’s law can be redrawn with vectors. The result is a single picture that shows, at a glance, which planes of a crystal diffract.
Building the Construction
De Graef and McHenry, Structure of Materials
De Graef and McHenry, Structure of Materials
Rotate the Crystal, Watch Points Cross the Circle
The reciprocal lattice is attached to the crystal, so rotating the crystal rotates the lattice about its origin O (the tip of \(\mathbf k\)). Whenever a point touches the circle, that family of planes is in Bragg orientation and a diffracted beam \(\mathbf k'\) flashes out.
Shorter \(\lambda\) means a bigger circle, so more points can reach it: more reflections become possible. Points farther than \(2/\lambda\) from O can never touch the circle, since \(\sin\theta\) cannot exceed 1.
The Ewald Sphere in 3D
A cubic reciprocal lattice slowly turns about its origin O. Each reciprocal lattice point that pierces the sphere lights up, and a diffracted beam leaves the sphere centre towards it.
From an XRD Pattern to a Structure
Working out structures from unknown patterns is a continuous, ongoing effort in science. There is still no general recipe that works for any unknown pattern, but a lot can be learned with a few simple steps.
ICDD
International Centre for Diffraction Data: the Powder Diffraction File, a reference pattern for hundreds of thousands of materials.
ICSD
Inorganic Crystal Structure Database: solved structures (cell, space group, atom positions) of inorganic compounds.
CSD
Cambridge Structural Database: structures of organic and metal–organic molecules and crystals.
These repositories are updated all the time. For most studies, comparing a measured pattern with the databases at least narrows down the structure. For a fuller discussion, see B. D. Cullity and S. R. Stock, Elements of X-ray Diffraction, 3rd ed., from which parts of this lecture are adapted.
Positions Tell the Cell, Intensities Tell the Atoms
A cubic crystal with atom A at \((0,0,0)\) and atom B at \((u,u,u)\). Change the lattice parameter and the peaks move. Move atom B inside the cell and the peaks stay put but their heights change.
The General Process
Shape & size of the cell
From the angular positions of the diffraction lines (spots).
Index the pattern
Assume one of the seven crystal systems / 14 Bravais lattices, then assign Miller indices to every line. This is called indexing the pattern.
Atoms per cell
From (a) the cell volume, (b) the chemical composition and (c) the measured density.
Atom positions
Finally, deduced from the relative intensities of the lines.
How Many Atoms per Unit Cell?
Mass of one cell = \(\rho\,a^3\). Mass of one atom (or formula unit) = \(M/N_A\). Dividing gives
The θ–2θ Diffractometer
The X-ray tube and the detector move together so that both make angle \(\theta\) with the sample surface; the detector therefore sits at \(2\theta\) from the incident beam. A powder contains crystallites in every orientation, so whenever some \((hkl)\) satisfies Bragg’s law, a peak is recorded.
Indexing XRD Patterns of Cubic Crystals
Combine Bragg’s law with the reciprocal-lattice formula for \(d_{hkl}\) from the last lecture, and one simple equation connects every peak to its Miller indices.
The Key Equation
Families of Planes and Their s
Which Values of s Actually Show Up?
Possible \(s\): \(\{100\}\to1\), \(\{110\}\to2\), \(\{111\}\to3\), \(\{200\}\to4\), \(\{210\}\to5\), \(\{211\}\to6\), \(\{220\}\to8\), \(\{221\},\{300\}\to9\), \(\{310\}\to10\), \(\{311\}\to11\), \(\{222\}\to12\), \(\{320\}\to13\), \(\{321\}\to14\), \(\{400\}\to16\)… But can you expect a line for every one of these in every cubic lattice? Hover or tap a cell.
Fingerprints of the Four Cubic Lattices
The same cubic cell (Cu Kα) drawn four times. Absent reflections are marked ×. Each lattice leaves its own sequence of \(s = h^2+k^2+l^2\).
Example: Copper
A copper pattern shows three peaks at \(2\theta\) = 43.36°, 50.50° and 74.20°. Let’s index it.
All (hkl) Up to s = 10 for Cu
\(a = 0.36148\) nm, \(\lambda = 0.15418\) nm (Cu Kα). Rows marked × are absent in real patterns because of systematic absences. Adapted from De Graef & McHenry, Structure of Materials.
| (hkl) | s | d (nm) | 2θ (°) |
|---|
Only (111), (200) and (220) appear between 30° and 80°, exactly as in real patterns of copper nanoparticles (e.g. Phul et al., Material Sci & Eng Int J. 2018; 2(4): 90–94).
Indexing Workbench
Mystery Cubic Sample
An unknown cubic crystal, measured with Cu Kα. Use the first few peaks, try each lattice type, and find the one that makes \(\sin^2\theta/s\) constant. Then enter the lattice parameter.
X-ray Diffraction Revisited
A careful look at one family of planes explains two puzzles at once: why a pattern shows (100), (200), (300)… peaks, and why adding atoms between planes can wipe out the (100) peak.
The (100) and (200) Story
The Same Story in 3D: Simple Cubic vs BCC
In a body-centred cubic crystal the body-centre atoms form a complete second set of (100) layers, exactly halfway between the corner layers. Both layers have one atom per \(a^2\), so they cancel the (100) reflection. The same happens for every \((hkl)\) with \(h+k+l\) odd.
Phase of the Wave Scattered by an Atom at \(\mathbf r\)
That distance is the projection of \(\mathbf r\) on the plane normal \(\mathbf g_{100}\). In units of the spacing, and turned into a phase:
For a general position \(\mathbf r = (x, y, z)\) and general planes \((hkl)\):
Combining the amplitude \(f\) and the phase \(\phi\) in one complex number gives the contribution of a single atom at \(\mathbf r\) to the beam diffracted by the \((hkl)\) planes:
Slide an Atom Between the Planes
Atom A sits at the origin; atom B at \((x, 0, 0)\). Both scatter with the same \(f\). Choose the order \(h\) of the \((h00)\) reflection.
The Structure Factor \(F_{hkl}\)
Sum over all \(N\) atoms of the unit cell: each atom’s amplitude times its phase factor (Eq. 12.6).
\(^*\) = complex conjugate. Only \(|F|^2\) is measured; the phase is lost.
- Each atom is a vector (phasor) of length \(f_j\) at angle \(\phi_j\) in the complex (Argand) plane.
- \(F\) is the vector sum of all phasors; \(|F|^2\) is proportional to the diffracted intensity.
- If the phasors close into a polygon, \(F = 0\): no diffracted beam even though Bragg’s law is satisfied. This is an extinction.
Structure-Factor Phasor Lab
| atom | x y z | φ |
|---|
For a quick comparison \(f\) is taken equal to \(Z\) (the forward-scattering value); real \(f\) values fall with \(\sin\theta/\lambda\) but do not change which reflections vanish.
Lattice Centring and the Structure Factor
One atom \(f\) at \(0,0,0\) plus its centring translations. The key identity is \(e^{i\pi n} = (-1)^n\) for integer \(n\).
No extinctions: every \((hkl)\) diffracts, \(I = f^2\).
Absent: \(h+k\) odd (mC, oC)
Absent: \(h+k+l\) odd (oI, tI, cI)
Present only if \(h, k, l\) are unmixed (all even or all odd)
Cubic Lattices: Survivors and Extinctions
| (hkl) | s | cP | cI | cF |
|---|
\(|F|^2\) for one atom of scattering factor \(f\) per lattice point (after Table 12.2, De Graef and McHenry).
These are the same sequences we used to index cubic patterns (Cu is cF).
Extinctions from Symmetry: Inversion and Screw Axes
Inversion centre at the origin: \(\mathbf r \to -\mathbf r\)
\[F_{hkl} = 2\sum_{j=1}^{N/2} f_j\cos\!\left(2\pi\,\mathbf g_{hkl}\cdot\mathbf r_j\right)\;\in\;\mathbb R\]The \(e^{+i\phi}\) and \(e^{-i\phi}\) terms pair into cosines, so \(F\) is real when the origin is on the inversion centre (phase 0 or \(\pi\)). An inversion centre causes no extinctions by itself.
Screw axis \(4_1\parallel c\) (through the origin)
Equivalent atoms: \((x, y, z)\), \((-y, x, z+\tfrac14)\), \((-x, -y, z+\tfrac12)\), \((y, -x, z+\tfrac34)\). For the \(00l\) reflections only the \(z\) coordinates matter:
The numerator is always 0; the denominator is 0 only when \(l = 4n\) (then, by l’Hôpital, \(S = 4\)). So \(00l\) reflections with \(l \ne 4n\) are absent: projected on \(c\), the atoms repeat every \(c/4\).
| Screw ∥ c | τ | 00l absent for |
|---|---|---|
| 21, 42, 63 | c/2 | l = 2n + 1 |
| 31, 32, 62, 64 | ±c/3 | l ≠ 3n |
| 41, 43 | ±c/4 | l ≠ 4n |
| 61, 65 | ±c/6 | l ≠ 6n |
After Table 12.3, De Graef and McHenry. τ is the translation that the screw adds along c in one rotation step (for 62, 64 the projected repeat is c/3).
Screw-Axis Phasors
Glides, Friedel’s Law and ITC Reflection Conditions
n-glide \(\parallel (001)\), \(\boldsymbol\tau = (\tfrac12, \tfrac12, 0)\)
An atom at \((x, y, z)\) has an identical partner at \((x+\tfrac12, y+\tfrac12, -z)\). For the zone \(hk0\) the \(z\) coordinate drops out:
⇒ \(hk0\) reflections with \(h+k\) odd are absent.
| Glide ∥ (001) | τ | hk0 absent for |
|---|---|---|
| a | a/2 | h = 2n + 1 |
| b | b/2 | k = 2n + 1 |
| n | (a + b)/2 | h + k = 2n + 1 |
| d | (a ± b)/4 | present only for h + k = 4n with h, k even |
After Table 12.4, De Graef and McHenry.
Friedel’s law
\[I_{hkl} = F_{hkl}F_{hkl}^* = F_{\bar h\bar k\bar l}^*F_{\bar h\bar k\bar l} = I_{\bar h\bar k\bar l}\]We measure intensities, not phases, so \((hkl)\) and \((\bar h\bar k\bar l)\) look identical (neglecting anomalous dispersion). Every diffraction pattern appears centrosymmetric, so only the 11 Laue classes can be told apart from intensities alone.
ITC: “Reflection conditions”
The International Tables list the conditions for a reflection to be present (the opposite of extinction conditions):
- \(Cmm2\), general position: \(hkl\): \(h+k = 2n\)
- \(Cmm2\), site 4c: extra condition \(hkl\): \(h = 2n\)
- \(Pmna\) (n-glide \(\perp b\)): \(h0l\): \(h+l = 2n\)
→ Absent reflections fingerprint the space group.
Structure Determination of Non-cubic Crystals
Things get harder as the number of unknowns grows. Cubic has one lattice parameter, \(a\). Tetragonal has two, \(a=b\) and \(c\). Lower symmetries have more still.
For a tetragonal crystal, \(1/d^2 = (h^2+k^2)/a^2 + l^2/c^2\). Putting this into Bragg’s law gives
The trick is to find the \((hk0)\) lines first. For them \(l=0\), so
and their \(\sin^2\theta\) values stand in the ratio of the allowed values of \(h^2+k^2\): 1, 2, 4, 5, 8, 9, 10, …. That gives \(A\). Subtracting \(A(h^2+k^2)\) from the remaining lines leaves multiples \(Cl^2\) = \(C\), \(4C\), \(9C\), …, which gives \(C\).
Tetragonal Line Finder
Reading Reflection Conditions in ITC
Every space-group page in the International Tables for Crystallography (ITC) lists reflection conditions: the conditions under which a reflection is present. Everything else is a systematic absence.
Is This Reflection Present?
CsCl, NaCl and Diamond
Superlattice Peaks Measure the Degree of Order
NaCl: two fcc lattices, \(\boldsymbol\tau = (\tfrac12,\tfrac12,\tfrac12)\)
\[F_{hkl}=\left[f_{\mathrm{Na}}+f_{\mathrm{Cl}}(-1)^{h+k+l}\right]\left[1+(-1)^{h+k}+(-1)^{h+l}+(-1)^{k+l}\right]\]- \(h,k,l\) mixed parity: \(I = 0\) (fcc condition)
- Unmixed, \(h+k+l\) even: \(I = 16(f_{\mathrm{Na}}+f_{\mathrm{Cl}})^2\), strong: (200), (220), (222)
- Unmixed, \(h+k+l\) odd: \(I = 16(f_{\mathrm{Na}}-f_{\mathrm{Cl}})^2\), weak: (111), (311)
Diamond: two fcc (C) lattices, \(\boldsymbol\tau = (\tfrac14,\tfrac14,\tfrac14)\)
\[F_{hkl}=2f_{\mathrm C}\,e^{\frac{i\pi}{4}(h+k+l)}\cos\!\left[\tfrac{\pi}{4}(h+k+l)\right]\left[1+(-1)^{h+k}+(-1)^{h+l}+(-1)^{k+l}\right]\]- Mixed parity: \(I = 0\)
- All odd: \(I = 32f_{\mathrm C}^2\): (111), (311), (331)
- All even, \(h+k+l = 4n\): \(I = 64 f_{\mathrm C}^2\): (220), (400)
- All even, \(h+k+l = 4n+2\): \(I = 0\): (200), (222). Extra extinctions!
Both cases can be explored phasor by phasor in the Structure-Factor Phasor Lab above.
From Diffracted to Measured Intensity
A real experiment integrates the diffracted intensity over time with a detector of finite size. For powder diffractometry, several correction factors multiply \(|F|^2\):
Intensities are rescaled so that the strongest peak = 100, so \(I_0\), \(K\), \(r\) and other common factors cancel.
Which atoms, where, and the symmetry
Number of equivalent planes diffracting at the same 2θ
Polarization plus the geometry of powder diffraction
Attenuation in the sample; constant for a flat-sample diffractometer
Debye–Waller: thermal vibrations smear the electron cloud
Debye–Waller Factor
- • Atoms vibrate about their sites; the amplitude grows with \(T\).
- • The time-averaged electron cloud looks larger and more diffuse, so \(f\) decreases.
The intensity is multiplied by \(e^{-2M}\); \(B\) is proportional to the mean-square atomic displacement.
\(B\) values from De Graef and McHenry. At 290 K, \(B_\mathrm W = 0.1581\) Ų: \(f_0 = 39.94\), \(e^{-Bs^2} = 0.9538\), so \(f = 38.09\).
\(A(\theta)\)
- • X-rays are partly absorbed along their path in the sample; \(A\) multiplies the intensity (not the amplitude).
- • Flat, thick sample in a powder diffractometer: the incoming and outgoing paths both make angle \(\theta\) with the surface, and the total irradiated depth compensates exactly, giving
\(\mu\) is the linear absorption coefficient. Being the same for every peak, it cancels when the intensities are rescaled.
- • Cylindrical sample (Debye–Scherrer camera): absorption is strongest at small \(2\theta\), opposite to the thermal effect, so the two nearly cancel.
- • Single crystals: \(A\) depends strongly on the sample shape.
Multiplicity Factor \(p_{hkl}\)
In a powder, all planes of a family \(\{hkl\}\) with the same \(d\) diffract into the same \(2\theta\), so their intensities add.
List the Equivalent Planes
Equivalents generated by the Laue-class symmetry (\(m\bar3m\), \(4/mmm\), \(mmm\), \(6/mmm\), \(2/m\) with b unique, \(\bar1\)). For hexagonal, \(l\) is the fourth Miller–Bravais index.
After Table 12.6, De Graef and McHenry.
Lorentz–Polarization Factor \(L_p(\theta)\)
A powder diffracts onto cones; the detector samples a fixed length of a ring of circumference \(2\pi R\sin 2\theta\).
The fraction of randomly oriented grains whose plane normals fall in the narrow band \(r\,\Delta\theta\) near the Bragg orientation.
Peak width \(\propto 1/\cos\theta\) and peak height \(\propto 1/\sin\theta\).
Large at low and high angles, smallest near \(\theta \approx 50^\circ\): low-angle peaks are boosted strongly.
Peak Shape and Crystallite Size: the Scherrer Formula
\(w\) is the full width at half maximum (FWHM). Gaussian tails decay quickly; Lorentzian tails are long.
- • A crystal still diffracts slightly off the exact Bragg angle: the phase error between planes is small, so the interference is incomplete.
- • Fewer planes (smaller grains) ⇒ a wider range of \(\Delta\theta\) ⇒ broader peaks.
\(D\) = mean grain diameter; \(w\) in radians
⇒ Nanocrystalline grains: this is why the nanoparticle peaks in the copper example are broad.
Grain Size ↔ Peak Width
Powder Pattern of Tungsten
bcc W, \(a = 0.31653\) nm, Cu Kα, \(T = 290\) K, \(B = 0.1581\) Ų; \(F = 2f\) (\(h+k+l\) even). Relative intensity \(\propto |F|^2 e^{-2M} p\,L_p\).
| (hkl) | 2θ (°) | f | p | Lp | I calc | I expt |
|---|
Calculated live from the formulas above (\(\lambda = 1.5418\) Å). Experimental values after Tables 12.7–12.8, De Graef and McHenry (Powder Diffraction File #04-0806).
Good agreement, considering that the experiment lists peak (not integrated) intensities.
Summary: What an XRD Pattern Tells Us
Peak positions
- • Bragg’s law: \(\lambda = 2d\sin\theta\)
- • \(d_{hkl}\) is fixed by the size and shape of the unit cell
- • Used to index the pattern and find the lattice parameters
Peak intensities
- • Which atoms: \(f(Z, \sin\theta/\lambda)\)
- • Where they are: \(F_{hkl} = \sum_j f_j e^{2\pi i(hx_j+ky_j+lz_j)}\)
- • Symmetry: centring, screw axes, glides ⇒ systematic absences
- • Measurement: \(p\), \(L_p\), \(A\), \(e^{-2M}\); peak width ⇒ grain size
Cubic BaTiO\(_3\) from Its Wyckoff Positions
Example Problem 10 (p. 175), Structure of Materials by Allen and Thomas: make a perspective sketch of the cubic form of barium titanate. Space group \(Pm\bar3m\), \(a = 4.009\) Å; Ba\(^{2+}\) in 1a, Ti\(^{4+}\) in 1b, O\(^{2-}\) in 3c.
| Mult. | Wyck. | Site sym. | Coordinates |
|---|---|---|---|
| 3 | c | 4/m m.m | 0,½,½ ½,0,½ ½,½,0 |
| 1 | b | m3̄m | ½,½,½ |
| 1 | a | m3̄m | 0,0,0 |
- 1Place Ba\(^{2+}\) at 1a (0,0,0) and apply the primitive-cubic lattice translations: Ba appears at all 8 corners (8 × ⅛ = 1 per cell).
- 2Ti\(^{4+}\) at 1b (½,½,½): any lattice translation takes it outside the cell, so one Ti sits at the body centre.
- 3O\(^{2-}\) at 3c: the three face-centre positions; translations give all 6 face centres (6 × ½ = 3 per cell). Formula: BaTiO\(_3\). Ti sits in an O\(_6\) octahedron.
Did It Sink In? - 17-19
Test your mastery of Bragg’s law, systematic absences, the Ewald sphere, indexing, the structure factor and intensity corrections.